GenetixBayEST. 2009
Breeding · Breeder · 3 min read

Quantitative traits and heritability: why most good traits are hard to fix

Yield, potency, terpene totals, vigour and flowering time are controlled by many genes plus environment. Heritability (the share of variation due to genes in a given population and setting) predicts how much of a selected plant's advantage passes to its offspring: response = heritability x selection differential. Cannabinoid ratios are highly heritable; absolute THC % and yield much less so.

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Short answer. A quantitative trait is one shaped by many genes of small effect plus the environment, so it varies continuously (grams, percent, days). Heritability tells you how much of the variation you see is genetic in your population and your room. When heritability is low, the best-looking plant is often just the luckiest, and its offspring regress towards the average.

What's happening

Observed variation splits into parts [1]:

V_P = V_G + V_E + V_GxE, and V_G = V_A + V_D + V_I

  • V_A, additive: the part that reliably passes to offspring.
  • V_D, dominance and V_I, epistasis (gene interactions): show in an individual or F1 but do not breed true.
  • V_E, environment: pot position, light, watering, pests.
  • V_GxE, genotype by environment: cultivar A beats B in coco but not in soil.

Two heritabilities:

  • Broad-sense (H²) = V_G / V_P. Useful for clone selection, because a clone copies the whole genotype.
  • Narrow-sense (h²) = V_A / V_P. Useful for seed breeding, because only additive effects reliably pass on.

The breeder's equation

R = h² x S [1]

  • S (selection differential) = mean of the plants you keep minus the mean of the population.
  • R (response) = how much the next generation's mean moves.

Example: a population averages 400 g/m². You keep plants averaging 500 g/m² (S = 100). If h² for yield in that setting is 0.3, expect next generation's mean around 430 g/m², not 500.

What we know for cannabis

Trait Heritability (indicative) Notes
THC:CBD ratio (chemotype) Very high Largely one inheritance unit; see chemotype inheritance
Cannabinoid composition ratios High; stable within a genotype Absolute amounts varied much more than ratios [2]
Absolute THC % Moderate Strongly affected by light, harvest timing and lab [2][4][5]
Flowering time Moderate to high, with major genes Cultivar origin predicted flowering in hemp [4]
Yield Low to moderate Strongly environment driven [5]
Terpene profile (which terpenes) Moderate to high Tandem terpene synthase genes; see strain-name article
Morphology and phenology Lower than cannabinoid traits in [2]

Naim-Feil et al. (2023) concluded that cannabinoid composition should respond more strongly to selection than morphological and phenological traits [2] (Supported). Published cannabis heritability values come from small, single-site studies; treat specific numbers as tentativebeing reviewed.

Lab numbers add noise too: THC results for similar products varied systematically between testing labs in Washington State [3]. A 2-point THC difference between two plants tested at two labs is not evidence of anything.

How to raise your effective heritability

You cannot change the genes' heritability by wishing, but you can cut V_E:

  1. Grow siblings side by side in the same pots, medium and feed. Randomise positions; edge plants get different light.
  2. Replicate. Score clones of each candidate (2-4 each) in a second run before choosing.
  3. Use the same lab, same harvest stage, same sample position (top cola) for chemistry.
  4. Measure, don't guess. Grams dry per plant, days to finish, weighed and dated in the journal.
  5. Progeny test. The best evidence a plant is genetically superior is how its offspring perform.

Numbers that matter

Concept Formula Use
Broad-sense heritability H² = V_G / V_P Clone selection
Narrow-sense heritability h² = V_A / V_P Seed lines
Response to selection R = h² x S Predict gain
Selection intensity i (e.g. top 10% ≈ 1.75; top 20% ≈ 1.40) R = i x h² x σ_P

Selection intensities are standard normal-distribution values [1].

Common mistakes

  • Picking the "keeper" from one run of one plant per seed. You are partly selecting the luckiest pot.
  • Treating THC % as a fixed property of a cut. It isn't [2][3].
  • Selecting on many traits at once with tiny populations. Gains per trait shrink fast.

Evidence

  • Variance partitioning and the breeder's equation: Established [1].
  • Cannabinoid ratios more heritable than absolute content and morphology: Supported [2].
  • Lab-to-lab THC variation: Supported [3].
  • Specific cannabis heritability values: Contested (small studies).

Questions this article answers

What is heritability in plant breeding?

Yield, potency, terpene totals, vigour and flowering time are controlled by many genes plus environment. Heritability (the share of variation due to genes in a given population and setting) predicts how much of a selected plant's advantage passes to its offspring: response = heritability x selection differential. Cannabinoid ratios are highly heritable; absolute THC % and yield much less so.

Why don't the offspring of my best plant perform as well?

Yield, potency, terpene totals, vigour and flowering time are controlled by many genes plus environment. Heritability (the share of variation due to genes in a given population and setting) predicts how much of a selected plant's advantage passes to its offspring: response = heritability x selection differential. Cannabinoid ratios are highly heritable; absolute THC % and yield much less so.

Is THC percentage genetic or environmental?

Yield, potency, terpene totals, vigour and flowering time are controlled by many genes plus environment. Heritability (the share of variation due to genes in a given population and setting) predicts how much of a selected plant's advantage passes to its offspring: response = heritability x selection differential. Cannabinoid ratios are highly heritable; absolute THC % and yield much less so.

What is the breeder's equation?

Yield, potency, terpene totals, vigour and flowering time are controlled by many genes plus environment. Heritability (the share of variation due to genes in a given population and setting) predicts how much of a selected plant's advantage passes to its offspring: response = heritability x selection differential. Cannabinoid ratios are highly heritable; absolute THC % and yield much less so.

How do I reduce environmental noise in a pheno hunt?

Yield, potency, terpene totals, vigour and flowering time are controlled by many genes plus environment. Heritability (the share of variation due to genes in a given population and setting) predicts how much of a selected plant's advantage passes to its offspring: response = heritability x selection differential. Cannabinoid ratios are highly heritable; absolute THC % and yield much less so.

What is genotype by environment interaction?

Yield, potency, terpene totals, vigour and flowering time are controlled by many genes plus environment. Heritability (the share of variation due to genes in a given population and setting) predicts how much of a selected plant's advantage passes to its offspring: response = heritability x selection differential. Cannabinoid ratios are highly heritable; absolute THC % and yield much less so.

Sources

  1. Suza W, Lamkey K (eds). 2023. Quantitative Genetics for Plant Breeding. Iowa State University Digital Press. iastate.pressbooks.pub/quantitativegenetics/
  2. Naim-Feil E, Elkins AC, Malmberg MM, et al. 2023. The Cannabis plant as a complex system: interrelationships between cannabinoid compositions, morphological, physiological and phenological traits. Plants 12(3):493. doi.org/10.3390/plants12030493
  3. Jikomes N, Zoorob M. 2018. The cannabinoid content of legal cannabis in Washington State varies systematically across testing facilities and popular consumer products. Scientific Reports 8:4519. doi.org/10.1038/s41598-018-22755-2
  4. Zhang M, Anderson SL, Brym ZT, Pearson BJ. 2021. Photoperiodic flowering response of essential oil, grain, and fiber hemp (Cannabis sativa L.) cultivars. Frontiers in Plant Science 12:694153. doi.org/10.3389/fpls.2021.694153
  5. Rodriguez-Morrison V, Llewellyn D, Zheng Y. 2021. Cannabis yield, potency, and leaf photosynthesis respond differently to increasing light levels in an indoor environment. Frontiers in Plant Science 12:646020. doi.org/10.3389/fpls.2021.646020

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